2. Pseudotime calculation

To interpret the celloracle simulation results, it is important to compare the simulated cell identity shift vector with the direction of natural development. We leverage pseudotime data to create development vector field.

Please download the notebook from here . Or please click below to view the content.

• Overview
• 0. Import libraries
• 1. Load data
• 2. Pseudotime calculation
• 3. Save data