Welcome to CellOracle’s documentation!¶
CellOracle is a python library for the in silico gene perturbation analysis using single-cell omics data and gene regulatory network models.
Source code is available at CellOracle GitHub repository and PyPI.
For more information, please read our paper: Dissecting cell identity via network inference and in silico gene perturbation
News¶
Please look Changelog page for all updates history of CellOracle package.
02/08/2023: CellOracle paper has been published in Nature article ! It is also highlighted in News and Views . Thank you very much to all contributors and users for your help!!!
02/02/2023: We released celloracle version 0.10.15. We fixed a bug in Motif data loading function.
01/03/2023: We released celloracle version 0.10.14. We added a Xenopus Laevis data.
10/10/2022: We released celloracle version 0.10.12. We added a new function to check distribution range of simulated value. Tutorial is also updated.