Welcome to CellOracle’s documentation!¶
CellOracle is a python library for the in silico gene perturbation analysis using single-cell omics data and gene regulatory network models.
Source code is available at CellOracle GitHub repository and PyPI.
For more information, please read our bioRxiv preprint: CellOracle: Dissecting cell identity via network inference and in silico gene perturbation
Warning
CellOracle is still under development. It is currently a beta version. Functions in this package may change in a future release.
News¶
Please look Changelog page for all updates history of CellOracle package.
01/03/2023: We released celloracle version 0.10.14. We added a Xenopus Laevis data.
10/10/2022: We released celloracle version 0.10.12. We added a new function to check distribution range of simulated value. Tutorial is also updated.
09/27/2022: We released celloracle version 0.10.11. We added a new function to change cluster color.
09/09/2022: We released celloracle version 0.10.10. We updated some functions in the network score calculation and visualization.