1. GRN model construction and network analysis

Please download the notebooks from here . Or please click below to view the content.

• Overview
  • Notebook file
  • Data
  • What you can do
  • Custom data classes / objects
• 0. Import libraries
• 1. Load data
• 2. Make Oracle object
  • 2.3.1. Make dictionary
  • 2.3.2. Add TF information dictionary into the oracle object
• 3. KNN imputation
• 4. Save and Load.
• 5. GRN calculation
• 6. Network preprocessing
• 7. Network analysis; Network score for each gene
• 8. Network analysis; network score distribution